Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_1572KEGG: sco:SCO6878 ATP-binding protein. (496 aa)    
Predicted Functional Partners:
Noca_1571
Hypothetical protein; KEGG: fal:FRAAL0036 putative integral membrane protein.
 
   
 0.955
Noca_1570
KEGG: fal:FRAAL0037 hypothetical protein; putative membrane protein.
 
     0.949
Noca_1576
Type IV secretory pathway VirD4 components-like protein; KEGG: sma:SAV4509 conjugative transfer gene complex protein.
 
  
 0.925
Noca_2250
PFAM: TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein.
 
   
 0.823
Noca_1580
PFAM: TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; KEGG: mmc:Mmcs_1430 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member-like protein.
 
   
 0.822
Noca_2242
KEGG: sco:SCO6880 lipoprotein.
 
   
 0.813
Noca_2246
Type IV secretory pathway VirD4 components-like protein; KEGG: fra:Francci3_2361 putative membrane protein.
 
  
 0.809
Noca_1569
Hypothetical protein.
       0.788
Noca_1567
Hypothetical protein.
       0.787
Noca_2241
KEGG: sco:SCO6881 ATP-binding protein.
 
     0.787
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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