Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_1597PFAM: GtrA family protein; KEGG: tfu:Tfu_2548 hypothetical protein. (154 aa)    
Predicted Functional Partners:
Noca_1596
PFAM: mannose-6-phosphate isomerase, type II; Cupin 2, conserved barrel domain protein; KEGG: syn:slr0493 putative mannose-1-phosphate guanylyltransferase.
       0.630
Noca_1599
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rha:RHA1_ro08011 sensory histidine kinase.
  
    0.554
Noca_1598
PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rha:RHA1_ro08012 response regulator, two-component system.
  
  
 0.553
Noca_1600
Hypothetical protein.
       0.547
Noca_1984
KEGG: sco:SCO2391 hypothetical protein.
  
     0.542
Noca_1595
PFAM: phosphoesterase, PA-phosphatase related; KEGG: fal:FRAAL0031 conserved hypothetical protein; putative integral membrane protein.
     
 0.483
Noca_0484
TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: cef:CE0431 hypothetical protein.
  
    0.482
Noca_2916
KEGG: sma:SAV2411 DNA-binding protein.
  
     0.478
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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