STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1655PFAM: carbohydrate kinase, FGGY; KEGG: mxa:MXAN_2879 putative xylulokinase. (549 aa)    
Predicted Functional Partners:
Noca_0381
L-ribulose 5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: blo:BL0273 L-ribulose-5-phosphate 4-epimerase.
  
 
 0.937
Noca_1656
Aminotransferase; PFAM: class II aldolase/adducin family protein; aminotransferase class-III; KEGG: psp:PSPPH_2738 glutamate-1-semialdehyde aminotransferase.
 
  
 0.935
xylA
Xylose isomerase; KEGG: sma:SAV7182 putative xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
  
 
 0.934
Noca_2446
PFAM: ribulose-phosphate 3-epimerase; KEGG: sco:SCO1464 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 0.921
Noca_1654
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: cjk:jk0549 putative lipase/esterase LipN.
     
 0.787
Noca_2541
TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: rha:RHA1_ro07186 transketolase; Belongs to the transketolase family.
  
 
 0.592
Noca_3184
Fructose PTS system EIIBC or EIIC component; TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: mmc:Mmcs_0080 phosphotransferase system, fructose IIC component; TC 4.A.2.1.4; TC 4.A.2.1.4; TC 4.A.2.1.4.
     
 0.579
Noca_4222
PFAM: Transketolase domain protein; KEGG: tma:TM0954 transketolase, N-terminal subunit.
    
 0.545
Noca_4221
Transketolase subunit B; PFAM: Transketolase, central region; Transketolase domain protein; KEGG: lmf:LMOf2365_1054 transketolase, C-terminal subunit, putative.
    
 0.538
Noca_1658
Glutamate dehydrogenase (NADP); PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: nfa:nfa45920 putative glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.533
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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