Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Noca_1664PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_0484 transcriptional regulator, TetR family. (189 aa)    
Predicted Functional Partners:
Noca_1666
KEGG: rha:RHA1_ro06064 possible ABC antibiotics transporter.
       0.557
Noca_1665
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro06063 probable ABC transporter, ATP-binding component.
       0.551
Noca_0106
PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: mmc:Mmcs_0342 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins.
  
     0.521
Noca_4374
KEGG: sco:SCO0378 conserved secreted protein.
  
     0.466
Noca_1251
PFAM: Fibronectin, type III domain protein; KEGG: mbo:Mb0063 possible cellulase CelA1 (endoglucanase) (endo-1,4-beta-glucanase) (fi-cmcase) (carboxymethyl cellulase); Belongs to the glycosyl hydrolase family 6.
  
     0.465
Noca_1297
Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR; KEGG: rha:RHA1_ro05520 possible transcriptional regulator, MarR family.
  
   
 0.436
Noca_1662
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cgb:cg3295 cation transport ATPase.
       0.432
Noca_1663
PFAM: Heavy metal transport/detoxification protein; KEGG: cgb:cg1328 putative copper chaperone.
       0.431
Noca_3737
KEGG: mpa:MAP3097 hypothetical protein.
  
     0.420
Noca_3360
PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro06435 possible transcriptional regulator, TetR family.
  
     0.411
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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