STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1665PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro06063 probable ABC transporter, ATP-binding component. (316 aa)    
Predicted Functional Partners:
Noca_1666
KEGG: rha:RHA1_ro06064 possible ABC antibiotics transporter.
 
  
 0.960
Noca_2212
KEGG: rha:RHA1_ro02954 possible ABC antibiotics transporter.
 
  
 0.833
Noca_2560
KEGG: nfa:nfa24760 putative ABC transporter.
 
  
 0.833
Noca_0479
PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro00945 ABC transporter, permease component.
 
  
 0.710
Noca_2110
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmc:Mmcs_3016 ABC transporter related; TC 3.A.1.4.-.
 
     
0.664
Noca_4448
KEGG: sco:SCO3959 possible integral membrane protein.
  
 
 0.581
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
     
0.569
Noca_1483
PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro04497 ABC transporter, permease component.
  
 0.568
Noca_1664
PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_0484 transcriptional regulator, TetR family.
     
 0.551
Noca_1667
Male sterility C-terminal domain; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: sru:SRU_2653 3-beta hydroxysteroid dehydrogenase/isomerase family.
       0.533
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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