STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1677KEGG: rha:RHA1_ro01260 possible membrane protein. (239 aa)    
Predicted Functional Partners:
Noca_1676
PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro01261 sigma factor, sigma 70 type, group 4; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.999
Noca_0714
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: rha:RHA1_ro01992 possible dehydrogenase.
   
  
 0.681
Noca_1675
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: lxx:Lxx07490 ATP-dependent RNA helicase.
       0.559
Noca_4672
PFAM: sigma-70 region 2 domain protein; KEGG: sco:SCO6996 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.539
Noca_1707
KEGG: tfu:Tfu_0549 anti-sigma factor.
  
   
 0.464
Noca_1906
KEGG: rxy:Rxyl_2197 hypothetical protein.
 
 
 0.449
Noca_1196
PFAM: protein of unknown function DUF664; KEGG: sma:SAV7047 hypothetical protein.
  
     0.443
Noca_1907
Hypothetical protein.
 
 
 0.443
Noca_1801
PFAM: regulatory protein, MarR; KEGG: tfu:Tfu_2393 regulatory protein, MarR.
  
  
 0.440
Noca_1702
PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO4117 hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.429
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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