STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1682KEGG: sma:SAV1793 hypothetical protein. (248 aa)    
Predicted Functional Partners:
Noca_1683
PFAM: bifunctional deaminase-reductase domain protein; KEGG: nfa:nfa33100 putative riboflavin-specific deaminase.
 
     0.926
Noca_1680
KEGG: sco:SCO6650 hypothetical protein.
 
     0.916
Noca_1679
Dehydrogenase; KEGG: sma:SAV1797 dehydrogenase.
 
    0.903
Noca_1681
PFAM: glycosyl transferase, group 1; KEGG: sma:SAV1795 glycosyl transferase.
 
  
 0.900
Noca_1678
PFAM: CDP-alcohol phosphatidyltransferase; sulfatase; KEGG: sma:SAV5650 hypothetical protein.
 
  
 0.891
Noca_1684
PFAM: GTP cyclohydrolase II; KEGG: sma:SAV4121 putative GTP cyclohydrolase II.
       0.790
Noca_3307
KEGG: mpa:MAP3677 hypothetical protein.
  
     0.442
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.