Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_1683PFAM: bifunctional deaminase-reductase domain protein; KEGG: nfa:nfa33100 putative riboflavin-specific deaminase. (231 aa)    
Predicted Functional Partners:
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
 
 
 0.936
Noca_1684
PFAM: GTP cyclohydrolase II; KEGG: sma:SAV4121 putative GTP cyclohydrolase II.
 
 
 0.933
Noca_1682
KEGG: sma:SAV1793 hypothetical protein.
 
     0.926
Noca_1678
PFAM: CDP-alcohol phosphatidyltransferase; sulfatase; KEGG: sma:SAV5650 hypothetical protein.
 
  
 0.852
Noca_2448
TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: sma:SAV6902 putative riboflavin synthase.
 
  
 0.840
Noca_1680
KEGG: sco:SCO6650 hypothetical protein.
 
   
 0.835
Noca_1679
Dehydrogenase; KEGG: sma:SAV1797 dehydrogenase.
 
    0.833
Noca_1681
PFAM: glycosyl transferase, group 1; KEGG: sma:SAV1795 glycosyl transferase.
 
    0.803
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
 
 
 0.791
Noca_0866
PFAM: GTP cyclohydrolase II; KEGG: sma:SAV545 putative GTP cyclohydrolase II.
 
 
 0.688
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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