STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1689Amino acid exporter, AAE family; PFAM: amino acid permease-associated region; KEGG: bte:BTH_II1129 amino acid permease; TC 2.A.3.13. (442 aa)    
Predicted Functional Partners:
Noca_0197
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: sco:SCO2226 bi-functional protein (secreted alpha-amylase/dextrinase).
  
 0.561
Noca_1690
KEGG: mxa:MXAN_6640 hypothetical protein.
       0.548
Noca_0775
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: tfu:Tfu_0833 alpha amylase, catalytic subdomain.
   
 0.502
Noca_1267
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: dra:DR0933 alpha-amlyase.
   
 0.502
Noca_1808
KEGG: sma:SAV2803 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
   
 0.502
glgE
Alpha amylase, catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 0.502
Noca_1691
Glycerol-3-phosphate cytidylyltransferase; TIGRFAM: cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase; cytidylyltransferase; KEGG: ppr:PBPRA2703 putative glycerol-3-phosphate cytidyltransferase.
   
 
 0.436
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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