Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_1726PFAM: peptidase S24, S26A and S26B; KEGG: sma:SAV2987 signal peptidase protein. (113 aa)    
Predicted Functional Partners:
Noca_1725
KEGG: sco:SCO5254 superoxide dismutase.
 
   
 0.905
Noca_4290
PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: sco:SCO0542 hypothetical regulatory protein.
  
     0.601
Noca_0176
PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4311 hypothetical protein.
  
     0.578
Noca_1727
Malate dehydrogenase (oxaloacetate-decarboxylating); PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: sma:SAV2981 putative malate dehydrogenase.
       0.555
Noca_1464
KEGG: tfu:Tfu_0510 hypothetical protein.
  
     0.532
Noca_0266
Lipoprotein; KEGG: sco:SCO7393 lipoprotein.
  
     0.513
Noca_1728
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: tfu:Tfu_1276 alcohol dehydrogenase.
       0.508
Noca_4310
KEGG: cps:CPS_4816 hypothetical protein.
   
    0.491
Noca_1729
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV2750 short chain dehydrogenase.
       0.489
Noca_3085
KEGG: tfu:Tfu_1045 hypothetical protein.
  
     0.449
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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