STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1776KEGG: sco:SCO4438 integral membrane protein. (603 aa)    
Predicted Functional Partners:
Noca_3818
KEGG: sco:SCO2807 integral membrane protein.
 
   
 0.789
Noca_1775
Hypothetical protein.
       0.773
Noca_4243
KEGG: sma:SAV1712 hypothetical protein.
 
   
 0.770
Noca_2727
KEGG: fal:FRAAL3586 hypothetical protein.
 
   
 0.738
Noca_2547
PFAM: phosphoesterase, PA-phosphatase related; KEGG: fal:FRAAL0765 putative RNA-binding protein.
 
   
 0.712
Noca_3556
PFAM: 2',5' RNA ligase; KEGG: fal:FRAAL1171 putative secreted protein; putative phosphodiesterase domain.
  
     0.508
Noca_1774
Ferritin, Dps family protein; Iron-storage protein.
       0.498
Noca_1771
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sco:SCO5386 anti-sigma factor antagonist.
 
    0.494
Noca_0266
Lipoprotein; KEGG: sco:SCO7393 lipoprotein.
  
     0.487
Noca_2583
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cya:CYA_0909 glycerophosphoryl diester phosphodiesterase family protein.
  
     0.459
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.