Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1776KEGG: sco:SCO4438 integral membrane protein. (603 aa)    
Predicted Functional Partners:
Noca_3818
KEGG: sco:SCO2807 integral membrane protein.
 
   
 0.784
Noca_1775
Hypothetical protein.
       0.773
Noca_4243
KEGG: sma:SAV1712 hypothetical protein.
 
   
 0.765
Noca_2727
KEGG: fal:FRAAL3586 hypothetical protein.
 
   
 0.732
Noca_2547
PFAM: phosphoesterase, PA-phosphatase related; KEGG: fal:FRAAL0765 putative RNA-binding protein.
 
   
 0.705
Noca_3556
PFAM: 2',5' RNA ligase; KEGG: fal:FRAAL1171 putative secreted protein; putative phosphodiesterase domain.
  
     0.508
Noca_1774
Ferritin, Dps family protein; Iron-storage protein.
       0.498
Noca_1771
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sco:SCO5386 anti-sigma factor antagonist.
 
    0.497
Noca_0266
Lipoprotein; KEGG: sco:SCO7393 lipoprotein.
  
     0.487
Noca_1138
KEGG: rxy:Rxyl_2783 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.483
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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