STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1785PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sma:SAV5186 sugar transport protein. (493 aa)    
Predicted Functional Partners:
Noca_4608
PFAM: Na+/solute symporter; KEGG: sma:SAV3025 putative proline permease; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.664
Noca_1786
Hypothetical protein.
       0.596
Noca_1787
KEGG: tfu:Tfu_2558 hypothetical protein.
 
     0.550
Noca_3201
PFAM: phosphoesterase; KEGG: bam:Bamb_5381 phosphoesterase.
  
     0.520
Noca_1784
PFAM: UDP-glucose/GDP-mannose dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sco:SCO6475 oxidoreductase.
  
    0.490
Noca_2124
PFAM: high-affinity nickel-transporter; KEGG: mpa:MAP2924 NicT; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.404
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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