STRINGSTRING
Noca_1829 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1829" - Short-chain dehydrogenase/reductase SDR in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1829Short-chain dehydrogenase/reductase SDR (265 aa)    
Predicted Functional Partners:
Noca_1828
acetyl-CoA acetyltransferase (406 aa)
              0.859
Noca_0202
Short-chain dehydrogenase/reductase SDR (239 aa)
 
          0.671
Noca_4133
Short-chain dehydrogenase/reductase SDR (270 aa)
   
          0.642
Noca_1827
Regulatory protein TetR (196 aa)
              0.631
Noca_4372
Short chain dehydrogenase (279 aa)
   
          0.589
Noca_1834
Short-chain dehydrogenase/reductase SDR (257 aa)
 
          0.586
Noca_4009
Short-chain dehydrogenase/reductase SDR (240 aa)
   
          0.584
Noca_2508
Short-chain dehydrogenase/reductase SDR (250 aa)
 
          0.580
Noca_1846
Short-chain dehydrogenase/reductase SDR (241 aa)
   
          0.569
Noca_0427
Short chain dehydrogenase (270 aa)
 
          0.554
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (7%) [HD]