STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1869PFAM: YceI family protein; KEGG: fal:FRAAL1996 hypothetical protein; Belongs to the UPF0312 family. (189 aa)    
Predicted Functional Partners:
Noca_1868
KEGG: nfa:nfa55090 hypothetical protein.
  
    0.659
Noca_1870
PFAM: regulatory protein, MarR; KEGG: fal:FRAAL1706 putative MarR-family transcriptional regulator.
 
   
 0.645
nhaA2
Sodium/proton antiporter, NhaA family; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; In the N-terminal section; belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
  
 
 0.596
Noca_1866
KEGG: rha:RHA1_ro04434 hypothetical protein.
  
    0.553
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
    0.515
Noca_1871
PFAM: cytochrome P450; KEGG: eba:ebA6767 hypothetical heme-thiolate monooxygenase.
       0.437
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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