Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1883PFAM: protein of unknown function DUF839; KEGG: sco:SCO3790 hypothetical protein. (702 aa)    
Predicted Functional Partners:
Noca_0442
Hypothetical protein.
     
 0.558
Noca_1882
PFAM: FAD dependent oxidoreductase; KEGG: nfa:nfa43490 putative monooxygenase.
       0.546
Noca_2321
PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: cgb:cg0397 probable 5'-nucleotidase precursor; Belongs to the 5'-nucleotidase family.
 
   
 0.453
Noca_3819
PFAM: Alkaline phosphatase; KEGG: sco:SCO2068 secreted alkaline phosphatase.
 
  
 0.428
leuS
TIGRFAM: leucyl-tRNA synthetase; KEGG: pac:PPA0893 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.425
Noca_2674
KEGG: tfu:Tfu_1967 hypothetical protein.
 
  
 0.418
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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