STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1900KEGG: mmc:Mmcs_2324 hypothetical protein. (287 aa)    
Predicted Functional Partners:
Noca_1291
PFAM: type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sma:SAV5140 protein involving differentiation.
 
     0.766
Noca_1902
PFAM: beta-lactamase domain protein; KEGG: mbo:Mb1948 hypothetical protein.
       0.721
Noca_1901
Hypothetical protein.
       0.645
Noca_1984
KEGG: sco:SCO2391 hypothetical protein.
  
     0.643
Noca_2959
KEGG: tfu:Tfu_2135 hypothetical protein.
  
     0.616
Noca_4348
KEGG: sco:SCO3647 hypothetical protein.
  
   
 0.590
hrcA
Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.
       0.589
Noca_2907
KEGG: fra:Francci3_1319 conserved hypothetical protein.
  
     0.575
Noca_1905
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.527
Noca_3675
KEGG: sma:SAV2229 hypothetical protein.
  
     0.523
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.