STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1906KEGG: rxy:Rxyl_2197 hypothetical protein. (294 aa)    
Predicted Functional Partners:
Noca_1907
Hypothetical protein.
 
    
0.726
Noca_1908
Sigma-70, region 4 type 2; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: tfu:Tfu_0842 putative RNA polymerase ECF-subfamily sigma factor.
       0.706
Noca_4682
KEGG: sco:SCO3895 hypothetical protein.
 
 
   0.704
Noca_0654
KEGG: sma:SAV1313 hypothetical protein.
  
     0.662
Noca_1441
KEGG: fal:FRAAL1307 hypothetical protein.
  
     0.655
Noca_1468
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sco:SCO4430 secreted protein.
  
     0.653
Noca_0906
KEGG: sma:SAV2206 hypothetical protein.
  
     0.651
Noca_3990
Hypothetical protein; KEGG: rha:RHA1_ro02174 possible glycoprotein.
  
     0.641
Noca_3577
Hypothetical protein.
 
     0.637
Noca_3586
Hypothetical protein; KEGG: sma:SAV3318 putative RNA polymerase ECF-subfamily sigma factor.
  
     0.617
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.