STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1920KEGG: sal:Sala_2850 hypothetical protein. (128 aa)    
Predicted Functional Partners:
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.774
Noca_1918
PFAM: Siderophore-interacting protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: rha:RHA1_ro06437 hypothetical protein.
       0.773
Noca_0821
Hypothetical protein; KEGG: fal:FRAAL3976 putative acyl-CoA dehydrogenase.
  
     0.603
Noca_1917
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rha:RHA1_ro04207 cyclopropane-fatty-acyl-phospholipid synthase.
       0.583
Noca_1916
PFAM: FAD linked oxidase domain protein; KEGG: rha:RHA1_ro04208 hypothetical protein.
       0.572
Noca_1914
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: pac:PPA0938 conserved protein, putative hemolysin.
       0.451
Noca_1915
KEGG: sma:SAV5589 hypothetical protein.
       0.451
Noca_4569
PFAM: FAD dependent oxidoreductase; KEGG: rha:RHA1_ro02919 flavin binding monooxygenase.
  
    0.417
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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