STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1925PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: fra:Francci3_3755 sigma 28 subunit; Belongs to the sigma-70 factor family. (282 aa)    
Predicted Functional Partners:
Noca_1924
PFAM: GAF domain protein; ANTAR domain protein; KEGG: sma:SAV1055 hypothetical protein.
 
     0.805
Noca_0762
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
  
 
 0.686
Noca_0761
KEGG: lxx:Lxx06310 flagellar basal-body rod protein; Belongs to the flagella basal body rod proteins family.
  
 
 0.685
Noca_1923
PFAM: ATP-binding region, ATPase domain protein domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mtc:MT1410 sensory box protein/anti-anti-sigma factor.
  
 
 0.681
Noca_0769
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mta:Moth_0746 flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
  
  
 0.664
Noca_1716
KEGG: fal:FRAAL5991 anti-sigma factor (partial match).
 
 
 0.662
Noca_0752
PFAM: flagellar hook capping protein; KEGG: bja:bll6853 hook formation protein.
  
  
 0.661
Noca_0747
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
  
 0.659
Noca_0749
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dsy:DSY3032 hypothetical protein.
  
  
 0.651
Noca_0746
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: tde:TDE2763 flagellar motor switch protein FliM.
  
 
 0.638
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.