STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1935PFAM: ABC-3 protein; KEGG: sco:SCO2507 putative metal transport ABC transporter. (337 aa)    
Predicted Functional Partners:
Noca_1936
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV5633 putative manganese transport system ABC transporter ATP-binding protein.
 
 0.999
Noca_1937
PFAM: periplasmic solute binding protein; KEGG: sco:SCO2505 putative ABC-transporter metal-binding lipoprotein.
 
 0.999
Noca_1934
Zinc uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sma:SAV5631 putative metal uptake regulation protein; Belongs to the Fur family.
  
  
 0.934
Noca_1876
KEGG: sus:Acid_6922 natural resistance-associated macrophage protein.
  
  
 0.719
glyQS
glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.539
Noca_1938
Periplasmic component of the Tol biopolymer transport system-like protein; KEGG: sma:SAV2712 hypothetical protein.
       0.536
Noca_0779
PFAM: iron dependent repressor; KEGG: sma:SAV3855 putative iron dependent regulatory protein.
  
  
 0.516
Noca_1329
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: sma:SAV3607 putative integral membrane transport protein.
 
  
 0.513
Noca_1939
KEGG: tfu:Tfu_0860 hypothetical protein.
       0.472
Noca_4251
Nickel uptake regulator, Fur family; PFAM: ferric-uptake regulator; Penicillinase repressor; KEGG: sma:SAV4029 iron uptake regulatory protein; Belongs to the Fur family.
 
  
 0.470
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.