STRINGSTRING
Noca_1952 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1952" - ABC transporter-like protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1952ABC transporter-like protein (215 aa)    
Predicted Functional Partners:
Noca_1953
Cytochrome c-type biogenesis protein CcmB (220 aa)
       
    0.987
Noca_1955
Cytochrome c assembly protein (254 aa)
       
  0.962
Noca_1483
ABC transporter (269 aa)
 
  0.788
Noca_0479
ABC transporter (245 aa)
 
  0.787
Noca_2544
ABC transporter (265 aa)
   
  0.786
Noca_0121
ABC transporter (252 aa)
   
  0.786
ftsH
Mername-AA223 peptidase; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins (681 aa)
 
      0.687
tsaD
Putative DNA-binding/iron metalloprotein/AP endonuclease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction (348 aa)
 
 
      0.683
Noca_1016
cysteine--tRNA ligase (390 aa)
 
     
  0.644
Noca_1958
Cytochrome c assembly protein (658 aa)
         
  0.633
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (8%) [HD]