STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1952PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mbu:Mbur_0983 ABC heme exporter, ATPase subunit. (215 aa)    
Predicted Functional Partners:
Noca_1953
PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dra:DR0407 cytochrome c-type biogenesis protein, heme exporter protein B.
    
  0.961
Noca_1955
PFAM: cytochrome c assembly protein; KEGG: dra:DR0348 cytochrome c-type biogenesis protein, heme exporter protein C.
    
  0.918
Noca_1181
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1184 branched-chain amino acid transport system ATP-binding protein; TC 3.A.1.4.-.
 
     0.693
Noca_1016
Cysteine--tRNA ligase; PFAM: cysteinyl-tRNA synthetase, class Ia; KEGG: tfu:Tfu_1832 cysteine--tRNA ligase.
  
   
 0.662
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.656
cysS
KEGG: pac:PPA0384 tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   
 0.652
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.621
mshC
cysteinyl-tRNA synthetase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.
  
   
 0.620
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
 
   0.611
Noca_4448
KEGG: sco:SCO3959 possible integral membrane protein.
  
 
 0.581
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.