STRINGSTRING
Noca_1965 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_1965" - Hypothetical protein in Nocardioides sp. JS614
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1965Hypothetical protein (282 aa)    
Predicted Functional Partners:
Noca_1964
Hypothetical protein (340 aa)
              0.748
Noca_1963
LmbE family protein (245 aa)
              0.577
Noca_2445
Putative DNA ligase (ATP), C-terminal (326 aa)
 
          0.566
ku
DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5’- and 3’- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD (331 aa)
 
          0.551
Noca_1235
ATP dependent DNA ligase (311 aa)
 
          0.534
Noca_2856
DNA primase-like protein (455 aa)
 
          0.503
Noca_3665
Hypothetical protein (360 aa)
 
          0.440
Noca_3999
Regulatory protein TetR (258 aa)
 
        0.412
Noca_0472
Type 11 methyltransferase (251 aa)
   
          0.402
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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