STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1995PFAM: AMP-dependent synthetase and ligase; KEGG: mmc:Mmcs_3758 AMP-dependent synthetase and ligase. (541 aa)    
Predicted Functional Partners:
Noca_1996
Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sco:SCO2369 thiol-specific antioxidant protein.
     
 0.684
Noca_0437
PFAM: acyl-CoA oxidase domain protein; acyl-CoA dehydrogenase domain protein; KEGG: tfu:Tfu_2239 hypothetical protein.
 
 
 0.587
Noca_2141
PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro04540 4,9-DSHA hydrolase.
  
 0.560
Noca_2775
PFAM: alpha/beta hydrolase fold; KEGG: nfa:nfa4730 putative hydrolase.
  
 0.560
Noca_2766
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV6197 putative oxidoreductase.
  
 0.554
Noca_1894
PFAM: AMP-dependent synthetase and ligase; KEGG: mmc:Mmcs_3602 AMP-dependent synthetase and ligase.
 
 
 0.527
Noca_1994
KEGG: mmc:Mmcs_3360 hypothetical protein.
       0.527
Noca_2019
PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro07030 possible acyl-CoA synthetase.
  
     0.490
Noca_2618
PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro03747 probable long-chain-fatty-acid--CoA ligase.
 
 
 0.484
Noca_0860
PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_1704 AMP-dependent synthetase and ligase.
 
0.453
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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