STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_1997PFAM: UspA domain protein; KEGG: mmc:Mmcs_1097 UspA. (386 aa)    
Predicted Functional Partners:
Noca_0997
PFAM: UspA domain protein; KEGG: rha:RHA1_ro02263 possible universal stress protein.
  
     0.750
Noca_1005
PFAM: UspA domain protein; KEGG: mpa:MAP1742c hypothetical protein.
  
     0.737
Noca_0996
PFAM: UspA domain protein; KEGG: mpa:MAP1742c hypothetical protein.
  
     0.724
Noca_1000
PFAM: UspA domain protein; KEGG: mmc:Mmcs_0719 UspA.
  
     0.675
Noca_0988
PFAM: UspA domain protein; KEGG: tfu:Tfu_3032 hypothetical protein.
  
     0.662
Noca_1998
TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; KEGG: fal:FRAAL3759 putative fatty acyl coA reductase.
       0.556
Noca_1999
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_2111 alcohol dehydrogenase, zinc-binding protein.
  
    0.544
Noca_2000
KEGG: rxy:Rxyl_2107 hypothetical protein.
       0.525
Noca_2001
PFAM: phospholipid/glycerol acyltransferase; KEGG: fra:Francci3_2279 phospholipid/glycerol acyltransferase.
       0.525
Noca_0990
KEGG: nfa:nfa28960 hypothetical protein.
 
  
 0.472
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.