STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2000KEGG: rxy:Rxyl_2107 hypothetical protein. (526 aa)    
Predicted Functional Partners:
Noca_1998
TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; KEGG: fal:FRAAL3759 putative fatty acyl coA reductase.
 
     0.940
Noca_2001
PFAM: phospholipid/glycerol acyltransferase; KEGG: fra:Francci3_2279 phospholipid/glycerol acyltransferase.
 
     0.933
Noca_1999
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_2111 alcohol dehydrogenase, zinc-binding protein.
 
     0.909
Noca_3933
PFAM: ExsB family protein; Haloacid dehalogenase domain protein hydrolase; PP-loop domain protein; KEGG: ade:Adeh_1542 hypothetical protein.
 
  
 0.886
Noca_0169
KEGG: syc:syc0382_d circadian phase modifier CpmA.
 
  
 0.846
larC
Protein of unknown function DUF111; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family.
 
  
 0.694
Noca_1997
PFAM: UspA domain protein; KEGG: mmc:Mmcs_1097 UspA.
       0.525
Noca_1327
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: sma:SAV3606 putative membrane protein.
  
    0.495
Noca_1328
KEGG: sma:SAV3606 putative membrane protein.
  
    0.495
Noca_0658
PFAM: aldo/keto reductase; KEGG: tma:TM1297 oxidoreductase, putative.
  
     0.459
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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