STRINGSTRING
Noca_2010 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2010" - NifU domain-containing protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2010NifU domain-containing protein (181 aa)    
Predicted Functional Partners:
Noca_2012
FeoA family protein (81 aa)
 
          0.955
Noca_2011
HSR1-like GTP-binding protein (648 aa)
 
          0.945
Noca_1175
Transaldolase (371 aa)
   
          0.695
Noca_0316
Oxidoreductase (517 aa)
   
          0.637
Noca_0465
Hypothetical protein (108 aa)
   
          0.525
Noca_1991
CdaR family transcriptional regulator (403 aa)
   
          0.481
Noca_1027
Hypothetical protein (791 aa)
   
          0.474
Noca_0008
Hypothetical protein (172 aa)
   
          0.447
Noca_3493
Membrane-flanked domain-containing protein (166 aa)
   
          0.414
hisE
phosphoribosyl-ATP pyrophosphatase (87 aa)
   
          0.405
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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