STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2014PFAM: protein of unknown function DUF164; KEGG: fal:FRAAL2220 conserved hypothetical protein; putative coiled-coil domain. (234 aa)    
Predicted Functional Partners:
Noca_2015
PFAM: ribonuclease H; Phosphoglycerate mutase; KEGG: sma:SAV5877 hypothetical protein.
  
  
 0.978
Noca_2013
PFAM: protein of unknown function DUF34; KEGG: rha:RHA1_ro01183 hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
  
  
 0.944
cobB-2
Hydrogenobyrinate a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
     
 0.601
Noca_0418
RNase HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 0.554
Noca_3132
KEGG: rha:RHA1_ro05908 hypothetical protein.
  
     0.520
Noca_0877
KEGG: fal:FRAAL6695 hypothetical protein.
  
     0.491
rbpA
Electron transport protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.450
Noca_2296
PFAM: RDD domain containing protein; KEGG: pac:PPA0672 hypothetical protein.
 
     0.423
Noca_2566
KEGG: pac:PPA1535 conserved membrane spanning protein.
 
     0.413
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.