STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2017PFAM: ribonuclease II; KEGG: sma:SAV5880 ribonuclease R. (467 aa)    
Predicted Functional Partners:
rph
RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
   
 0.982
Noca_3676
PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: sma:SAV2231 putative ribonuclease D.
   
 
 0.933
Noca_3956
KEGG: sco:SCO4310 hypothetical protein.
 
 
 0.806
Noca_2016
PFAM: protein of unknown function DUF328; KEGG: sco:SCO2297 hypothetical protein; Belongs to the UPF0246 family.
 
     0.755
Noca_2486
PFAM: NUDIX hydrolase; KEGG: tfu:Tfu_1200 conserved hypothetical protein.
   
 0.734
Noca_3458
PFAM: NUDIX hydrolase; KEGG: mmc:Mmcs_4021 NUDIX hydrolase.
   
 0.734
Noca_2462
PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: sma:SAV6740 putative rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
 
 0.620
Noca_2601
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tfu:Tfu_2264 putative rRNA methylase.
  
 
 0.620
Noca_4020
TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: mmc:Mmcs_4736 RNA methyltransferase TrmH, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
 
 0.620
Noca_4352
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tfu:Tfu_2449 tRNA/rRNA methyltransferase.
  
 
 0.620
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.