STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2018PFAM: phosphoribosyltransferase; dienelactone hydrolase; KEGG: mbo:Mb0586c hypothetical protein. (406 aa)    
Predicted Functional Partners:
Noca_3989
Trehalose 6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.644
Noca_1522
PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: nfa:nfa41810 hypothetical protein.
       0.607
Noca_4235
PFAM: heat shock protein Hsp20; KEGG: rha:RHA1_ro08348 heat shock protein (18 KDa antigen-like protein); Belongs to the small heat shock protein (HSP20) family.
 
  
 0.605
Noca_2637
PFAM: peptidase M50; KEGG: tfu:Tfu_1815 hypothetical protein; Belongs to the peptidase M50B family.
 
  
 0.583
Noca_0998
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ade:Adeh_0468 cation transporting P-type ATPase.
 
  
 0.580
Noca_3183
PFAM: PfkB domain protein; KEGG: nfa:nfa28550 putative fructose-1-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.521
gcvP
Glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
    0.502
Noca_0994
PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: tfu:Tfu_3046 GAF:ATP-binding region, ATPase-like.
 
    0.496
Noca_1965
PFAM: protein of unknown function DUF72; KEGG: rha:RHA1_ro02437 hypothetical protein.
 
     0.480
Noca_2017
PFAM: ribonuclease II; KEGG: sma:SAV5880 ribonuclease R.
       0.476
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.