STRINGSTRING
Noca_2018 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2018" - Phosphoribosyltransferase in Nocardioides sp. JS614
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2018Phosphoribosyltransferase (406 aa)    
Predicted Functional Partners:
Noca_2017
Ribonuclease II (467 aa)
              0.535
Noca_3416
Berberine/berberine domain-containing protein (202 aa)
   
        0.465
Noca_2637
Peptidase M50 (378 aa)
   
          0.439
Noca_2016
Hypothetical protein (251 aa)
              0.419
purD
Phosphoribosylamine--glycine ligase (416 aa)
              0.408
pnp
Polynucleotide phosphorylase/polyadenylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (742 aa)
              0.408
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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