STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2019PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro07030 possible acyl-CoA synthetase. (841 aa)    
Predicted Functional Partners:
Noca_2022
PFAM: extracellular solute-binding protein, family 1; KEGG: fra:Francci3_1592 extracellular solute-binding protein, family 1.
 
   
 0.922
Noca_2021
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fra:Francci3_1591 binding-protein-dependent transport systems inner membrane component.
 
     0.904
Noca_2020
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: fra:Francci3_1590 ABC transporter related; Belongs to the ABC transporter superfamily.
 
     0.848
Noca_2023
KEGG: sil:SPO2120 amidinotransferase family protein.
       0.546
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
  
 
  0.507
Noca_1995
PFAM: AMP-dependent synthetase and ligase; KEGG: mmc:Mmcs_3758 AMP-dependent synthetase and ligase.
  
     0.490
Noca_0860
PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_1704 AMP-dependent synthetase and ligase.
 
 0.458
Noca_4116
PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_0353 AMP-dependent synthetase and ligase.
  
     0.419
acpP
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.408
Noca_4368
Hypothetical protein.
  
 
 0.405
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.