STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2020PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: fra:Francci3_1590 ABC transporter related; Belongs to the ABC transporter superfamily. (353 aa)    
Predicted Functional Partners:
Noca_2021
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fra:Francci3_1591 binding-protein-dependent transport systems inner membrane component.
 0.994
Noca_2022
PFAM: extracellular solute-binding protein, family 1; KEGG: fra:Francci3_1592 extracellular solute-binding protein, family 1.
 
 
 0.991
Noca_2019
PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro07030 possible acyl-CoA synthetase.
 
     0.848
Noca_3226
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV2588 putative polyamine ABC-transporter integral membrane protein.
 
 
 0.833
Noca_2070
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO3454 putative ABC-transporter membrane protein.
 
 
 0.832
Noca_4091
KEGG: bxe:Bxe_A0185 ABC dipeptide/oligopeptide/nickel transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
    
0.828
Noca_3214
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1735 putative ABC transporter permease protein.
 
 
 0.806
Noca_2069
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cyb:CYB_0132 ABC transporter, permease protein.
 
 
 0.802
Noca_3227
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV2589 putative polyamine ABC-transporter permease protein.
 
 
 0.795
Noca_3215
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1736 putative ABC transporter permease protein.
 
 
 0.789
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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