Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Noca_2022PFAM: extracellular solute-binding protein, family 1; KEGG: fra:Francci3_1592 extracellular solute-binding protein, family 1. (333 aa)    
Predicted Functional Partners:
Noca_2021
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fra:Francci3_1591 binding-protein-dependent transport systems inner membrane component.
 
 
 0.997
Noca_2020
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: fra:Francci3_1590 ABC transporter related; Belongs to the ABC transporter superfamily.
 
 
 0.991
Noca_2019
PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro07030 possible acyl-CoA synthetase.
 
   
 0.922
Noca_0434
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5647 ABC transporter integral membrane protein.
  
  
 0.730
Noca_4400
PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06491 transporter, MFS superfamily.
  
  
 0.709
Noca_2023
KEGG: sil:SPO2120 amidinotransferase family protein.
       0.546
Noca_3274
Alanine-glyoxylate aminotransferase apoenzyme; PFAM: aminotransferase, class V; KEGG: hma:rrnAC1999 aminotransferase class V.
  
  
 0.403
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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