STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2040PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cef:CE0204 putative transport protein. (418 aa)    
Predicted Functional Partners:
Noca_2719
PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: fra:Francci3_3000 protein of unknown function DUF21.
 
  
0.768
Noca_2041
PFAM: glucose sorbosone dehydrogenase; KEGG: rha:RHA1_ro05704 hypothetical protein.
       0.721
Noca_2039
Hypothetical protein.
       0.636
panB
Ketopantoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.566
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.488
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.468
Noca_1912
PFAM: PhoH family protein; KEGG: tfu:Tfu_0844 phosphate starvation-inducible protein PhoH predicted ATPase.
  
  
 0.453
Noca_2047
PFAM: glutamine amidotransferase class-I; KEGG: sco:SCO0603 amino transferase.
 
   
 0.435
Noca_1915
KEGG: sma:SAV5589 hypothetical protein.
  
    0.421
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.416
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.