Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2072KEGG: sco:SCO3458 integral membrane protein. (225 aa)    
Predicted Functional Partners:
Noca_2068
KEGG: sco:SCO3456 putative secreted protein.
 
  
 0.922
Noca_2069
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cyb:CYB_0132 ABC transporter, permease protein.
 
     0.853
Noca_2067
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sco:SCO3457 transmembrane protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.836
Noca_2070
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO3454 putative ABC-transporter membrane protein.
 
     0.820
Noca_2071
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mmc:Mmcs_5124 ABC transporter related; Belongs to the ABC transporter superfamily.
       0.790
Noca_2065
PFAM: glycosyl transferase, group 1; KEGG: rxy:Rxyl_2620 phosphatidyl-myo-inositol alpha-mannosyltransferase.
  
  
 0.429
Noca_2918
Thiosulfate sulfurtransferase; PFAM: Rhodanese domain protein; KEGG: nfa:nfa10240 putative thiosulfate sulfurtransferase.
 
  
 0.426
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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