Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Noca_2084PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: mtc:MT1714 transcriptional regulator, Crp/Fnr family. (230 aa)    
Predicted Functional Partners:
Noca_1641
PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rxy:Rxyl_1332 transcriptional regulator, Crp/Fnr family.
  
     0.762
Noca_1660
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rxy:Rxyl_1803 transcriptional regulator, Crp/Fnr family.
  
     0.758
Noca_1619
PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: lsl:LSL_1782 transcriptional regulator, crp family.
  
     0.756
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.637
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.623
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.601
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.595
Noca_2083
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
     
 0.561
Noca_2085
PFAM: Patatin; KEGG: rha:RHA1_ro01898 possible lipid acyl hydrolase.
     
 0.538
Noca_1006
PFAM: PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: xcv:XCV1708 histidine kinase-response regulator hybrid protein.
  
 
 0.513
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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