Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Noca_2085PFAM: Patatin; KEGG: rha:RHA1_ro01898 possible lipid acyl hydrolase. (314 aa)    
Predicted Functional Partners:
Noca_2084
PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: mtc:MT1714 transcriptional regulator, Crp/Fnr family.
     
 0.538
Noca_0015
PFAM: phospholipid/glycerol acyltransferase; KEGG: fal:FRAAL0743 hypothetical protein; putative signal peptide; putative acyltransferase domain.
 
   
 0.536
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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