STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2091PFAM: transcriptional regulator domain protein; GAF domain protein; KEGG: sma:SAV7178 transcriptional regulator. (417 aa)    
Predicted Functional Partners:
Noca_2092
PFAM: aldehyde dehydrogenase; KEGG: sma:SAV7177 putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 
 0.820
Noca_3315
Dihydroxyacetone kinase DhaL subunit; PFAM: Dak phosphatase; KEGG: tfu:Tfu_1716 glycerone kinase.
   
 
 0.580
Noca_3316
Dihydroxyacetone kinase DhaK subunit; PFAM: Dak kinase; KEGG: tfu:Tfu_1716 glycerone kinase.
   
 
 0.580
Noca_2088
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sco:SCO3460 putative mercuric dehydrogenase.
     
 0.540
Noca_2089
Hypothetical protein.
       0.508
Noca_2090
PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO3450 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.508
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.