Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2099Hypothetical protein. (252 aa)    
Predicted Functional Partners:
Noca_2097
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: abo:ABO_1174 GMC oxidoreductase family protein.
       0.513
Noca_2095
PFAM: aldehyde dehydrogenase; KEGG: nfa:nfa3930 putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.500
Noca_2096
Hypothetical protein.
       0.500
Noca_2098
PFAM: regulatory protein, TetR; KEGG: nfa:nfa6460 putative transcriptional regulator.
       0.500
Noca_2094
Hypothetical protein.
       0.432
Noca_1376
PFAM: globin; KEGG: sco:SCO2671 putative globin.
  
  
 0.428
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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