STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2102KEGG: pac:PPA0093 hypothetical membrane protein. (378 aa)    
Predicted Functional Partners:
Noca_2101
PFAM: multicopper oxidase, type 3; KEGG: pac:PPA0092 hypothetical protein.
     0.989
Noca_2100
KEGG: mag:amb3531 hypothetical protein.
 
     0.862
Noca_2106
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; KEGG: rha:RHA1_ro08261 possible transcriptional regulator, MarR family.
 
     0.815
Noca_3980
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pac:PPA0240 hypothetical protein.
 
     0.799
Noca_3981
Transcriptional regulator; PFAM: LexA DNA-binding domain protein; KEGG: mpa:MAP2725c hypothetical protein.
 
     0.773
Noca_1344
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; LexA DNA-binding domain protein; KEGG: mpa:MAP2725c hypothetical protein.
 
     0.760
Noca_4305
KEGG: rha:RHA1_ro08261 possible transcriptional regulator, MarR family.
 
     0.723
Noca_2103
Hypothetical protein.
       0.681
Noca_2104
PFAM: OsmC family protein; KEGG: rxy:Rxyl_0142 OsmC-like protein.
       0.655
Noca_2105
2-oxo-acid dehydrogenase E1 component homodimeric type; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
       0.518
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.