Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2103Hypothetical protein. (159 aa)    
Predicted Functional Partners:
Noca_2104
PFAM: OsmC family protein; KEGG: rxy:Rxyl_0142 OsmC-like protein.
       0.773
Noca_2102
KEGG: pac:PPA0093 hypothetical membrane protein.
       0.682
Noca_2101
PFAM: multicopper oxidase, type 3; KEGG: pac:PPA0092 hypothetical protein.
  
    0.677
Noca_2105
2-oxo-acid dehydrogenase E1 component homodimeric type; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
       0.605
Noca_2100
KEGG: mag:amb3531 hypothetical protein.
       0.520
Noca_2106
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; KEGG: rha:RHA1_ro08261 possible transcriptional regulator, MarR family.
       0.500
Noca_2107
PFAM: protein of unknown function DUF664; KEGG: sco:SCO2990 hypothetical protein.
       0.400
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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