STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2109KEGG: sma:SAV6531 hypothetical protein. (176 aa)    
Predicted Functional Partners:
Noca_2110
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmc:Mmcs_3016 ABC transporter related; TC 3.A.1.4.-.
       0.773
Noca_2111
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB1157 high-affinity branched-chain amino acid transport ATP-binding protein; TC 3.A.1.4.-.
       0.773
Noca_2112
PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A2754 ABC branched chain amino acid family transporter, inner membrane subunit; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
       0.773
Noca_2113
Amino acid/amide ABC transporter membrane protein 1, HAAT family; PFAM: inner-membrane translocator; KEGG: mes:Meso_0478 inner-membrane translocator; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
       0.773
Noca_2114
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Extracellular ligand-binding receptor; KEGG: tfu:Tfu_1779 hypothetical protein; TC 3.A.1.4.-.
       0.773
Noca_2115
KEGG: mxa:MXAN_1131 hypothetical protein.
       0.773
Noca_2108
PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: nfa:nfa43000 putative esterase.
       0.732
Noca_2107
PFAM: protein of unknown function DUF664; KEGG: sco:SCO2990 hypothetical protein.
       0.636
Noca_2106
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; KEGG: rha:RHA1_ro08261 possible transcriptional regulator, MarR family.
       0.502
Noca_2116
PFAM: DGPFAETKE family protein; KEGG: ade:Adeh_1007 DGPFAETKE domain-containing protein.
       0.462
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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