STRINGSTRING
Noca_2117 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_2117" - Sigma-70 region 2 domain-containing protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2117Sigma-70 region 2 domain-containing protein (422 aa)    
Predicted Functional Partners:
Noca_2116
DGPFAETKE family protein (125 aa)
 
          0.898
Noca_0396
DGPFAETKE family protein (120 aa)
 
          0.863
Noca_3868
DGPFAETKE family protein (160 aa)
 
          0.719
Noca_2118
Hypothetical protein (173 aa)
              0.598
Noca_2629
Glyoxalase/bleomycin resistance protein/dioxygenase (146 aa)
 
          0.580
Noca_4451
Activator of Hsp90 ATPase 1 family protein (154 aa)
 
          0.544
Noca_0970
DGPFAETKE family protein (118 aa)
   
          0.530
Noca_2115
Hypothetical protein (361 aa)
              0.418
Noca_2114
Extracellular ligand-binding receptor (474 aa)
              0.418
Noca_2113
Inner-membrane translocator (302 aa)
              0.418
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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