Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_2117RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: mxa:MXAN_5731 RNA polymerase sigma-70 factor, ECF subfamily. (422 aa)    
Predicted Functional Partners:
Noca_2116
PFAM: DGPFAETKE family protein; KEGG: ade:Adeh_1007 DGPFAETKE domain-containing protein.
 
  
 0.838
Noca_0396
PFAM: DGPFAETKE family protein; KEGG: sma:SAV1196 hypothetical protein.
 
  
 0.788
Noca_3868
PFAM: DGPFAETKE family protein; KEGG: sco:SCO4453 hypothetical protein.
 
  
 0.619
Noca_2118
KEGG: nfa:nfa31490 hypothetical protein.
       0.531
Noca_0970
PFAM: DGPFAETKE family protein; KEGG: rha:RHA1_ro00578 hypothetical protein.
 
  
 0.515
Noca_4451
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rha:RHA1_ro06715 hypothetical protein.
 
     0.406
Noca_2114
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Extracellular ligand-binding receptor; KEGG: tfu:Tfu_1779 hypothetical protein; TC 3.A.1.4.-.
       0.405
Noca_2109
KEGG: sma:SAV6531 hypothetical protein.
       0.401
Noca_2110
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmc:Mmcs_3016 ABC transporter related; TC 3.A.1.4.-.
       0.401
Noca_2111
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB1157 high-affinity branched-chain amino acid transport ATP-binding protein; TC 3.A.1.4.-.
       0.401
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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