STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2124PFAM: high-affinity nickel-transporter; KEGG: mpa:MAP2924 NicT; Belongs to the NiCoT transporter (TC 2.A.52) family. (347 aa)    
Predicted Functional Partners:
Noca_3200
PFAM: phosphoesterase; KEGG: pac:PPA1745 hypothetical protein (phosphoesterase family).
  
     0.556
Noca_1601
PFAM: protein of unknown function DUF347; KEGG: fal:FRAAL6358 putative integral membrane protein (partial match).
  
     0.476
Noca_2772
PFAM: Cupin 2, conserved barrel domain protein; KEGG: sus:Acid_7653 cupin 2, conserved barrel domain protein.
 
     0.470
Noca_4608
PFAM: Na+/solute symporter; KEGG: sma:SAV3025 putative proline permease; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.451
Noca_3201
PFAM: phosphoesterase; KEGG: bam:Bamb_5381 phosphoesterase.
  
     0.431
Noca_1603
PFAM: phosphoesterase; KEGG: fal:FRAAL3218 putative acid phosphatase.
  
     0.421
Noca_2889
Protoporphyrin IX magnesium-chelatase; KEGG: tfu:Tfu_0313 Mg-chelatase subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; von Willebrand factor, type A; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
       0.412
Noca_1007
PFAM: phosphoesterase; KEGG: sma:SAV5971 secreted acid phosphatase.
  
     0.406
Noca_1785
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sma:SAV5186 sugar transport protein.
  
     0.404
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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