STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2129KEGG: rpd:RPD_3222 phenylacetate--CoA ligase. (472 aa)    
Predicted Functional Partners:
Noca_3158
TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: sma:SAV4353 putative phenylacetic acid degradation protein.
 
 
 0.978
Noca_3156
TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: sco:SCO7474 putative phenylacetic acid degradation protein PaaD.
 
  
 0.972
Noca_3159
TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: sma:SAV4354 putative phenylacetic acid degradation protein.
 
 
 0.971
Noca_3157
TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: rpc:RPC_0689 phenylacetate-CoA oxygenase, PaaI subunit.
 
 
 0.970
Noca_3155
TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sco:SCO7475 putative phenylacetic acid degradation NADH oxidoreductase PaaE.
 
 
 0.950
Noca_0666
PFAM: Amidase; KEGG: mmc:Mmcs_1995 amidase.
    
 0.909
Noca_1228
PFAM: Amidase; KEGG: mpa:MAP2509c putative amidase; Belongs to the amidase family.
    
 0.909
Noca_3358
PFAM: Amidase; KEGG: tfu:Tfu_2207 amidase; Belongs to the amidase family.
    
 0.909
Noca_1493
PFAM: Amidase; KEGG: rha:RHA1_ro04799 probable amidase; Belongs to the amidase family.
    
 0.905
Noca_2130
LAO/AO transport system ATPase; KEGG: pfu:PF1947 hypothetical protein; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase.
  
    0.786
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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