Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_2133PFAM: regulatory proteins, IclR; KEGG: rha:RHA1_ro02487 transcriptional regulator, IclR family. (258 aa)    
Predicted Functional Partners:
Noca_2977
PFAM: Allophanate hydrolase subunit 1; KEGG: sma:SAV6938 inhibitor of KinA.
  
    0.587
Noca_2135
PFAM: Rieske [2Fe-2S] domain protein; KEGG: sma:SAV6327 ferredoxin subunit of phenylpropionate dioxygenase.
  
    0.542
Noca_2134
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro01381 possible ferredoxin--NAD(+) reductase.
       0.539
Noca_2138
PFAM: class II aldolase/adducin family protein; KEGG: mlo:mlr6791 similar to adducins.
 
     0.522
Noca_0850
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sco:SCO7702 GntR-family transcriptional regulator.
 
  
 0.518
Noca_4063
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mta:Moth_2304 GntR-like.
 
  
 0.490
Noca_0092
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: tfu:Tfu_1968 allophanate hydrolase subunit 2.
  
    0.473
Noca_2976
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: sma:SAV6937 antagonist of KipI.
  
    0.473
Noca_0841
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bha:BH3167 transcriptional regulator (GntR family).
 
  
 0.469
Noca_2137
PFAM: Rieske [2Fe-2S] domain protein; KEGG: fal:FRAAL6167 hypothetical protein; putative dioxygenase.
     
 0.465
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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