Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_2142Hypothetical protein; KEGG: rpb:RPB_1061 protocatechuate 4,5-dioxygenase. (352 aa)    
Predicted Functional Partners:
Noca_2141
PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro04540 4,9-DSHA hydrolase.
  
  
 0.570
Noca_2143
PFAM: regulatory protein, MarR; KEGG: mmc:Mmcs_5446 transcriptional regulator, MarR family.
     
 0.521
Noca_0718
KEGG: hne:HNE_2670 putative lipoprotein.
  
     0.511
Noca_1605
PFAM: protein of unknown function DUF214; KEGG: sco:SCO6365 putative integral membrane protein.
 
     0.490
Noca_2138
PFAM: class II aldolase/adducin family protein; KEGG: mlo:mlr6791 similar to adducins.
 
   
 0.452
Noca_0827
PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: fal:FRAAL3401 putative dioxygenase component, beta subunit.
 
   
 0.446
Noca_3972
PFAM: PKD domain containing protein; KEGG: sde:Sde_3982 protein of unknown function DUF37.
  
     0.446
Noca_1651
PFAM: Hydratase/decarboxylase; KEGG: nfa:nfa33180 putative hydratase.
  
  
 0.432
Noca_2055
PFAM: Hydratase/decarboxylase; KEGG: mxa:MXAN_0925 putative 4-oxalocrotonate decarboxylase.
  
  
 0.432
Noca_2151
PFAM: Hydratase/decarboxylase; KEGG: rha:RHA1_ro08085 2-oxopent-4-enoate hydratase.
  
  
 0.432
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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