STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2144PFAM: amidohydrolase 2; KEGG: rba:RB9860 hypothetical protein. (281 aa)    
Predicted Functional Partners:
Noca_2145
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0600 branched-chain amino acid transport ATP-binding protein livF; TC 3.A.1.4.-.
       0.737
Noca_2146
Branched-chain amino acid transport system permease protein; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_1891 ABC transporter related; TC 3.A.1.4.-; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
       0.737
Noca_2147
Amino acid/amide ABC transporter membrane protein 1, HAAT family; PFAM: inner-membrane translocator; KEGG: bbr:BB4292 branched-chain amino acid transport system permease; TC 3.A.1.4.-.
       0.737
Noca_0845
PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: mes:Meso_4533 mandelate racemase/muconate lactonizing enzyme-like.
 
   
 0.716
Noca_0038
PFAM: Dimethylmenaquinone methyltransferase; KEGG: pol:Bpro_2296 dimethylmenaquinone methyltransferase.
 
   
 0.647
Noca_2148
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Extracellular ligand-binding receptor; KEGG: gsu:GSU1734 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative; TC 3.A.1.4.-.
       0.628
Noca_0401
Short-chain dehydrogenase/reductase SDR; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: syn:slr1208 short-chain alcohol dehydrogenase family.
 
  
 0.616
Noca_4176
PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rha:RHA1_ro08313 probable mandalate racemase.
 
   
 0.582
Noca_1769
PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04560 probable transporter, MFS superfamily.
 
  
 0.573
Noca_4189
KEGG: rha:RHA1_ro02904 possible fumarylacetoacetate hydrolase.
 
   
 0.571
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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