Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2168KEGG: mmc:Mmcs_3184 hypothetical protein. (244 aa)    
Predicted Functional Partners:
Noca_2167
KEGG: mmc:Mmcs_3184 hypothetical protein.
     0.994
Noca_2166
PFAM: thioesterase superfamily protein; KEGG: nfa:pnf2350 hypothetical protein.
 
     0.758
Noca_2519
KEGG: mmc:Mmcs_4641 hypothetical protein.
  
     0.752
Noca_3579
KEGG: nfa:nfa19270 hypothetical protein.
  
     0.508
Noca_0391
PFAM: Limonene-1,2-epoxide hydrolase; KEGG: nfa:nfa48080 hypothetical protein.
  
     0.431
Noca_1810
PFAM: peptidase M36, fungalysin; KEGG: rxy:Rxyl_2538 coagulation factor 5/8 type-like protein.
  
     0.416
Noca_2535
KEGG: mpa:MAP2795 hypothetical protein.
  
     0.415
Noca_4370
KEGG: nfa:nfa29530 hypothetical protein.
  
     0.414
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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