STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2173PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro04167 possible transcriptional regulator. (200 aa)    
Predicted Functional Partners:
Noca_2172
PFAM: MMPL domain protein; KEGG: mmc:Mmcs_5142 MmpL.
 
  
 0.905
Noca_2174
PFAM: regulatory protein, MarR; KEGG: tfu:Tfu_0351 helix-turn-helix, fis-type.
 
     0.664
Noca_0117
PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa31300 putative transcriptional regulator.
  
   
 0.533
Noca_1017
KEGG: mmc:Mmcs_1202 hypothetical protein.
  
     0.457
Noca_4431
PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sco:SCO7307 chromosome replication initiation inhibitor protein; Belongs to the LysR transcriptional regulatory family.
   
 
 0.430
Noca_1934
Zinc uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sma:SAV5631 putative metal uptake regulation protein; Belongs to the Fur family.
   
  
 0.417
Noca_2864
PFAM: MMPL domain protein; KEGG: rha:RHA1_ro05027 membrane protein.
 
  
 0.416
Noca_1405
PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; FG-GAP repeat protein; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: sma:SAV5036 hypothetical protein.
  
     0.403
Noca_4606
PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4151 acetyltransferase.
  
     0.400
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.