STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2174PFAM: regulatory protein, MarR; KEGG: tfu:Tfu_0351 helix-turn-helix, fis-type. (133 aa)    
Predicted Functional Partners:
Noca_2259
PFAM: ParB domain protein nuclease; KEGG: rha:RHA1_ro03182 possible chromosome partitioning protein-like protein.
  
   
 0.701
Noca_2173
PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro04167 possible transcriptional regulator.
 
     0.664
Noca_1582
PFAM: ParB domain protein nuclease; KEGG: rha:RHA1_ro03182 possible chromosome partitioning protein-like protein.
  
   
 0.633
Noca_2229
PFAM: Peptidoglycan-binding LysM; KEGG: sco:SCP1.176 putative large membrane protein.
 
  
 0.633
Noca_0898
KEGG: fra:Francci3_0932 hypothetical protein.
  
     0.632
Noca_2226
PFAM: TadE family protein; KEGG: sco:SCP1.173 hypothetical protein.
  
    0.629
Noca_1538
KEGG: fra:Francci3_1784 hypothetical protein.
  
     0.585
Noca_2241
KEGG: sco:SCO6881 ATP-binding protein.
  
   
 0.563
Noca_2220
PFAM: SAF domain; KEGG: rha:RHA1_ro10043 hypothetical protein.
  
  
 0.561
Noca_2224
PFAM: type II secretion system protein; KEGG: rha:RHA1_ro10047 hypothetical protein.
 
    0.558
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.